The Center for Cancer Systems Pharmacology

People

Fellows & Students at LSP

Fellows
Students

Fellows

Ali Amiryousefi, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Gregory Baker, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Glioblastoma, Cancer systems immunology, Computational biology
Johanna Beyer, PhD
Postdoctoral Research Associate
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Biomedical data visualization, Volume visualization
Nazim Bouatta, PhD
Senior Research Fellow
Other Lab Affiliations: Sorger Lab (HMS), AlQuraishi Lab (Columbia)
Research Interests: Protein conformation and dynamics, Protein-ligand interaction, Representations and symmetries for molecular systems
Sankha Chakrabarty, PhD
Postdoctoral Fellow
Other Lab Affiliations: Santagata Lab (BWH)
Christopher Chidley, PhD
Independent Research Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Cancer metabolism, Transporters, Genetic screening
Sourav Chowdhury, PhD
Postdoctoral Fellow
Other Lab Affiliations: Shakhnovich Lab (FAS)
Nicholas Clark, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Biostatistics, Genomics, Machine learning
Neil Dalvie
HIVE Fellow
Research Collaborator
Other Lab Affiliations: Silver Lab, Systems Biology
Coralie Dessauges, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Live cell imaging, MAPK signaling, Persister cells
Jennifer Gantchev, PhD
Postdoctoral Fellow
Research Collaborator
Other Lab Affiliations: Santagata Lab (BWH)
Nomeda Girnius, PhD
Postdoctoral Fellow
Other Lab Affiliations: Brugge Lab (HMS)
Research Interests: Stress response in early stage of tumorigenesis
Siyu Huang, PhD
Postdoctoral Research Fellow
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Computer vision, Deep learning, Biomedical image analysis
Tanjina Kader, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS), Santagata Lab (BWH)
Junsik Kim, PhD
Postdoctoral Research Associate
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Computer vision, Machine learning, Anomaly detection
Corey Ma, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Julie MacDonald, PhD
Postdoctoral Fellow
Other Lab Affiliations: Letai Lab (DFCI)
Disha Malani, PhD
Postdoctoral Fellow
Other Lab Affiliations: Letai Lab (DFCI)
Lucy Maria McCully Espinosa, PhD
Postdoctoral Fellow
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Antibiotic resistance evolution, Phages, Interspecies interactions
Kelley McQueeney, PhD
Postdoctoral Fellow
Other Lab Affiliations: Letai Lab (DFCI)
Daniel Michaud, PhD
Postdoctoral Fellow
Other Lab Affiliations: Guerriero Lab (BWH)
Edward Novikov, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS), Pfister Lab (Harvard SEAS)
Research Interests: Biomedical data analysis, machine learning, Spatial statistics, Computer vision, segmentation
Emmanuel Ogbonna, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS), Aldridge Lab (Tufts)
Siân Owen, PhD
Postdoctoral Fellow
Other Lab Affiliations: Baym Lab (DBMI)
Shishir Pant, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Tumor microenvironment, Therapy resistance, Multiplex imaging
Isaac Pence, PhD
Postdoctoral Fellow
Other Lab Affiliations: Evans Lab (MGH)
Research Interests: Coherent Raman imaging, Translational biophotonics, Cutaneous pharmacokinetic tomography
Soheil Rastgou Talemi, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS), Santagata Lab
Or-yam Revach, PhD
Postdoctoral Fellow
Other Lab Affiliations: Jenkins Lab (MGH)
Fernando Rossine, PhD
Postdoctoral Fellow
Other Lab Affiliations: Baym Lab (DBMI)
Charles Tapley Hoyt, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Chemoinformatics, Ontologies, Biocuration, Machine learning, Drug discovery
Tuulia Vallius, MD, PhD
Postdoctoral Fellow
Medical Oncology Fellow, Turku University Hospital & University of Turku
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Tumor microenvironment, Melanoma progression, Cancer biomarkers
Jeremiah Wala, MD, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab, DFCI
Guihong Wan, PhD
Postdoctoral Research Fellow
Other Lab Affiliations: Semenov Lab (MGH)
Jason Williams
Research Fellow in Dermatology
Other Lab Affiliations: Thomas Kupper Lab (BWH), Sorger Lab
Alex Wong, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Hongyan Xie, PhD
Postdoctoral Fellow
Other Lab Affiliations: Jenkins Lab (MGH)
Research Interests: Response and resistance to PD-1 blockade, Novel combination strategies to overcome resistance to cancer immunotherapy, Immunogenic cell death

Students

Salma Abdel Magid
PhD Student
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Computer vision, Interpretable machine learning, Adversarial robustness
Zergham Ahmed
Graduate Student
Other Lab Affiliations: Sorger Lab (HMS), SEAS
Alexander Chung
Research Collaborator
Other Lab Affiliations: Albers Lab (MGH)
Daniel Eaton
Graduate Student
Other Lab Affiliations: Paulsson Lab
Dan Freeman
Graduate Student
Other Lab Affiliations: Sorger Lab (HMS)
Indra Gonzalez Ojeda
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Sheila Johnson
Graduate Student
Other Lab Affiliations: Haigis Lab (HMS)
Ethan Jones
Graduate Student
Other Lab Affiliations: Silver Lab (Systems Biology)
Arya Kaul
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Microbial genetics, Antibiotic resistance, Computational genetics
Laura König
Visiting Graduate Student
Other Lab Affiliations: Albers Lab (MGH)
Research Interests: Alzheimer’s and ALS, Pharmacology and drug repurposing
Anurag Limdi
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Microbial ecology and evolution
Sasha Mukhija
Research Collaborator
Other Lab Affiliations: Albers Lab (MGH)
Deborah Plana
MD-PhD Candidate in Harvard Systems Biology
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Data science and statistics, Clinical trials, Oncology, Bioengineering
Alex Poret
Graduate Student
Other Lab Affiliations: Baym Lab
Natalia Quiñones-Olvera
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Mobile genetic elements, Bacteriophages, Bioinformatics
Eleanor Rand
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Interactions between phage and antibiotic resistance
Rumana “Ru” Rashid, MS
Graduate Student
Other Lab Affiliations: Santagata Lab (BWH)
Martin Qvist Rasmussen
Graduate Student
Other Lab Affiliations: Jenkins Lab (MGH)
Research Interests: Melanoma, Tumor heterogeneity, Therapy resistance
Carlos Sanchez
Graduate Student
Other Lab Affiliations: Paulsson Lab
Yingxiao Shi (TK)
Doctoral Student
Other Lab Affiliations: Liu and Van Allen Labs (DFCI)
Alex Tepper, BSc
Visiting Graduate Student
Other Lab Affiliations: Santagata Lab (BWH)
Simon Warchol
PhD Student
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Biomedical data visualization, Visual analytics
Sophia Wiesenfeld
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI/LSP)
Amy Zamora
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Antibiotic resistance evolution, Phages