The Center for Cancer Systems Pharmacology

People

Fellows & Students at LSP

Fellows
Students

Fellows

Gregory Baker, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Glioblastoma, Cancer systems immunology, Computational biology
Johanna Beyer, PhD
Postdoctoral Research Associate
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Biomedical data visualization, Volume visualization
Nazim Bouatta, PhD
Senior Research Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Protein conformation and dynamics, Protein-ligand interaction, Representations and symmetries for molecular systems
Karel Brinda, PhD
Postdoctoral Fellow
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Bioinformatics, Sequence analysis, Rapid diagnostics
Jia-Yun Chen, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Single-cell quantitative imaging, Long term time lapse microscopy, Cancer biology
Ratul Chowdhury, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Single-sequence protein structure prediction, All-atom simulations of protein drug interactions
Nicholas Clark, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Biostatistics, Genomics, Machine learning
Fabian Froehlich, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Structure-based kinetic models, Drug combinations, Adaptive resistance
Giorgio Gaglia, PhD
Ludwig Postdoctoral Fellow
Other Lab Affiliations: Santagata Lab (BWH)
Research Interests: Tumor organization, Signalling pathways, Spatial analysis
Siyu Huang, PhD
Postdoctoral Research Fellow
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Computer vision, Deep learning, Biomedical image analysis
Jared Jessup, BA
Fellow
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Biomedical data visualization, Visual analytics, Information design
Ajit Johnson Nirmal, PhD
Independent Postdoctoral Fellow, Harvard Medical School
Other Lab Affiliations: Weinstock Lab (DFCI), Sorger Lab (HMS)
Research Interests: Spatial Biology, Tumor Micoenvironment, Omic intergration
Junsik Kim, PhD
Postdoctoral Research Associate
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Computer vision, Machine learning, Anomaly detection
Lucy Maria McCully Espinosa, PhD
Postdoctoral Fellow
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Antibiotic resistance evolution, Phages, Interspecies interactions
Kelley McQueeney, PhD
Postdoctoral Fellow
Other Lab Affiliations: Letai Lab (DFCI)
Maulik Nariya, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Cancer pharmacology, Bioinformatics, Statistical learning
Siân Owen, PhD
Postdoctoral Fellow
Other Lab Affiliations: Baym Lab (DBMI)
Shishir Pant, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Tumor microenvironment, Therapy resistance, Multiplex imaging
Isaac Pence, PhD
Postdoctoral Fellow
Other Lab Affiliations: Evans Lab (MGH)
Research Interests: Coherent Raman imaging, Translational biophotonics, Cutaneous pharmacokinetic tomography
Or-yam Revach, PhD
Postdoctoral Fellow
Other Lab Affiliations: Jenkins Lab (MGH)
Fernando Rossine, PhD
Postdoctoral Fellow
Other Lab Affiliations: Baym Lab (DBMI)
Charles Tapley Hoyt, PhD
Postdoctoral Fellow
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Chemoinformatics, Ontologies, Biocuration, Machine learning, Drug discovery
Tuulia Vallius, MD, PhD
Postdoctoral Fellow
Medical Oncology Fellow, Turku University Hospital & University of Turku
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Tumor microenvironment, Melanoma progression, Cancer biomarkers
Guihong Wan, PhD
Postdoctoral Research Fellow
Other Lab Affiliations: Semenov Lab (MGH)
Hongyan Xie, PhD
Postdoctoral Fellow
Other Lab Affiliations: Jenkins Lab (MGH)
Research Interests: Response and resistance to PD-1 blockade, Novel combination strategies to overcome resistance to cancer immunotherapy, Immunogenic cell death

Students

Salma Abdel Magid
PhD Student
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Computer vision, Interpretable machine learning, Adversarial robustness
Indra Gonzalez Ojeda
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Lukas Herzberger
Visiting Graduate Student
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Sheila Johnson
Graduate Student
Other Lab Affiliations: Haigis Lab (HMS)
Arya Kaul
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Microbial genetics, Antibiotic resistance, Computational genetics
Laura Konig
Visiting Graduate Student
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Alzheimer’s and ALS, Pharmacology and drug repurposing
Anurag Limdi
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Microbial ecology and evolution
Edward Novikov
PhD Candidate
Other Lab Affiliations: Pfister Lab (Harvard SEAS), Sorger Lab (HMS)
Research Interests: Biomedical data analysis, machine learning, Spatial statistics, Computer vision, segmentation
Deborah Plana
MD-PhD Candidate in Harvard Systems Biology
Other Lab Affiliations: Sorger Lab (HMS)
Research Interests: Data science and statistics, Clinical trials, Oncology, Bioengineering
Natalia Quiñones-Olvera
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Mobile genetic elements, Bacteriophages, Bioinformatics
Eleanor Rand
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Interactions between phage and antibiotic resistance
Martin Qvist Rasmussen
Graduate Student
Other Lab Affiliations: Jenkins Lab (MGH)
Research Interests: Melanoma, Tumor heterogeneity, Therapy resistance
Simon Warchol
PhD Student
Other Lab Affiliations: Pfister Lab (Harvard SEAS)
Research Interests: Biomedical data visualization, Visual analytics
Amy Zamora
Graduate Student
Other Lab Affiliations: Baym Lab (DBMI)
Research Interests: Antibiotic resistance evolution, Phages